STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_391g5Zn(2)-C6 fungal-type domain-containing protein. (932 aa)    
Predicted Functional Partners:
VP01_1640g3
Uncharacterized protein.
    
 0.762
VP01_3267g4
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.640
VP01_610g6
Uncharacterized protein.
    
  0.635
VP01_381g6
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.635
VP01_2681g1
PINc domain-containing protein.
    
  0.635
VP01_1195g2
Uncharacterized protein.
    
  0.635
VP01_1058g4
Uncharacterized protein.
    
  0.635
VP01_2062g3
Uncharacterized protein.
  
 0.634
VP01_196g2
Peptide hydrolase; Belongs to the peptidase M28 family.
  
 0.634
VP01_2056g2
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
  0.632
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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