STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_404g6Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
VP01_551g5
RIC1 domain-containing protein.
    
 0.944
VP01_551g1
Uncharacterized protein.
    
 0.944
VP01_59g7
Rab family protein.
    
 0.874
VP01_2811g2
Uncharacterized protein.
    
 0.809
VP01_3527g1
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.800
VP01_104g7
Uncharacterized protein.
     
 0.776
VP01_924g2
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.765
VP01_918g3
GTP-binding protein ypt1.
    
 0.760
VP01_130g8
Vps54 domain-containing protein.
     
 0.754
VP01_3999g2
Uncharacterized protein.
    
  0.733
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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