VP01_392g11 protein (Puccinia sorghi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP01_392g11

Uncharacterized protein. (222 aa)

Predicted Functional Partners:

VP01_1391g2

0.898

VP01_494g2

0.896

VP01_275g7

0.891

VP01_1912g2

0.886

VP01_104g9

0.883

VP01_1101g1

0.880

VP01_2729g3

0.875

VP01_609g10

0.874

VP01_32g26

0.860

VP01_2587g1

0.858

Your Current Organism:

Puccinia sorghi

NCBI taxonomy Id: 27349
Other names: P. sorghi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP01_104g9	VP01_1101g1	A0A0L6VUA3	A0A0L6VST0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.992
VP01_104g9	VP01_1391g2	A0A0L6VUA3	A0A0L6VLB4	Uncharacterized protein.	Uncharacterized protein.	0.989
VP01_104g9	VP01_1912g2	A0A0L6VUA3	A0A0L6VD98	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.995
VP01_104g9	VP01_2729g3	A0A0L6VUA3	A0A0L6V3B7	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
VP01_104g9	VP01_275g7	A0A0L6VUA3	A0A0L6V2X3	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.776
VP01_104g9	VP01_32g26	A0A0L6VUA3	A0A0L6UZC7	Uncharacterized protein.	Uncharacterized protein.	0.999
VP01_104g9	VP01_392g11	A0A0L6VUA3	A0A0L6UUG5	Uncharacterized protein.	Uncharacterized protein.	0.883
VP01_104g9	VP01_494g2	A0A0L6VUA3	A0A0L6ULZ5	Uncharacterized protein.	Uncharacterized protein.	0.999
VP01_104g9	VP01_609g10	A0A0L6VUA3	A0A0L6UHY0	Uncharacterized protein.	Uncharacterized protein.	0.827
VP01_1101g1	VP01_104g9	A0A0L6VST0	A0A0L6VUA3	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.992
VP01_1101g1	VP01_1391g2	A0A0L6VST0	A0A0L6VLB4	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.988
VP01_1101g1	VP01_1912g2	A0A0L6VST0	A0A0L6VD98	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
VP01_1101g1	VP01_2729g3	A0A0L6VST0	A0A0L6V3B7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
VP01_1101g1	VP01_275g7	A0A0L6VST0	A0A0L6V2X3	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.772
VP01_1101g1	VP01_32g26	A0A0L6VST0	A0A0L6UZC7	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.987
VP01_1101g1	VP01_392g11	A0A0L6VST0	A0A0L6UUG5	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.880
VP01_1101g1	VP01_494g2	A0A0L6VST0	A0A0L6ULZ5	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.991
VP01_1101g1	VP01_609g10	A0A0L6VST0	A0A0L6UHY0	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.788
VP01_1391g2	VP01_104g9	A0A0L6VLB4	A0A0L6VUA3	Uncharacterized protein.	Uncharacterized protein.	0.989
VP01_1391g2	VP01_1101g1	A0A0L6VLB4	A0A0L6VST0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.988