STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_373g3t-SNARE coiled-coil homology domain-containing protein. (399 aa)    
Predicted Functional Partners:
VP01_3591g1
Uncharacterized protein.
    
 0.998
VP01_69g5
Uncharacterized protein.
    
 0.996
VP01_2248g2
Vesicle transporter SEC22; Belongs to the synaptobrevin family.
   
 0.991
VP01_823g2
Sec39 domain-containing protein.
    
 0.986
VP01_2956g2
Uncharacterized protein.
    
 0.986
VP01_142g23
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.954
VP01_966g8
Uncharacterized protein.
    
 0.947
VP01_686g3
AGC protein kinase.
    
 0.937
VP01_2152g9
AGC protein kinase.
    
 0.937
VP01_1609g12
Serine/threonine protein kinase.
    
 0.937
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.