STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_382g2Uncharacterized protein. (977 aa)    
Predicted Functional Partners:
VP01_328g10
CNH domain-containing protein.
   
 0.997
VP01_1971g4
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.997
VP01_1076g4
Pep3_Vps18 domain-containing protein.
   
 0.997
VP01_580g3
Uncharacterized protein.
    
 0.996
VP01_1461g3
CNH domain-containing protein.
   
 0.995
VP01_712g4
Vps8 domain-containing protein.
    
 
 0.988
VP01_2344g2
Uncharacterized protein.
    
 0.969
VP01_2344g3
RING-type domain-containing protein.
    
 0.969
VP01_1793g4
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.968
VP01_463g15
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.959
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.