STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3342g2PseudoU_synth_2 domain-containing protein. (293 aa)    
Predicted Functional Partners:
VP01_839g2
CMP/dCMP-type deaminase domain-containing protein.
   
 0.944
VP01_2002g2
tRNA modification GTPase TrmE.
   
 
 0.893
VP01_896g5
Dihydrofolate reductase; Belongs to the dihydrofolate reductase family.
  
 
 0.888
VP01_2033g2
TRUD domain-containing protein.
  
 
 0.881
VP01_616g8
PfkB domain-containing protein.
    
 0.855
VP01_3470g1
Riboflavin biosynthesis protein RibD domain-containing protein.
    
 0.855
VP01_444g9
Uncharacterized protein.
  
 
  0.841
VP01_3308g1
Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.
    
 0.833
VP01_1902g3
Glyco_trans_2-like domain-containing protein.
    
 0.833
VP01_2730g5
Uncharacterized protein.
  
 0.826
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.