STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3269g1Uncharacterized protein. (270 aa)    
Predicted Functional Partners:
VP01_2904g2
Uncharacterized protein.
   
   0.824
VP01_2584g3
Cytochrome c oxidase subunit XI assembly protein.
   
 
 0.750
VP01_1717g1
Uncharacterized protein.
    
   0.721
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.705
VP01_6099g1
Protein-tyrosine phosphatase.
    
   0.704
VP01_2366g1
Rhodanese domain-containing protein.
   
   0.704
VP01_1173g1
Hydroxyacylglutathione hydrolase.
    
   0.704
VP01_3700g1
S4 RNA-binding domain-containing protein.
    
 
 0.697
VP01_1479g3
Histone chaperone ASF1.
    
   0.692
VP01_2881g5
Archaeal ribosomal protein S17P; Belongs to the universal ribosomal protein uS17 family.
   
   0.678
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.