STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsPRibosomal protein S16. (291 aa)    
Predicted Functional Partners:
rpmJ
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.999
VP01_969g7
Uncharacterized protein.
  
 
 0.999
VP01_9g13
Uncharacterized protein.
  
 
 0.999
VP01_953g8
Uncharacterized protein.
   
 
 0.999
VP01_885g1
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 
 0.999
VP01_725g7
Uncharacterized protein.
  
 0.999
VP01_632g8
Uncharacterized protein.
   
 0.999
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 0.999
rpmB
Ribosomal protein L28.
  
 
 0.999
rpsC
Ribosomal protein S3.
   
 
 0.999
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.