STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3121g1RING-type domain-containing protein. (312 aa)    
Predicted Functional Partners:
VP01_3134g3
Large subunit ribosomal protein L40e.
    
  0.526
VP01_182g4
Uncharacterized protein.
    
  0.526
VP01_72g6
CIA30 domain-containing protein.
    
  0.503
VP01_1310g5
Ubiquitin-40S ribosomal protein S27a-2.
    
  0.503
VP01_4g16
Uncharacterized protein.
    
  0.485
VP01_2244g1
Uncharacterized protein.
    
  0.485
VP01_1373g8
AN1-type domain-containing protein.
    
  0.485
VP01_334g3
EGF-like domain-containing protein.
    
  0.474
VP01_162g4
Kexin.
    
  0.474
VP01_2438g4
Ubiquitin-conjugating enzyme E2.
    
  0.471
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.