STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2952g1Uncharacterized protein. (1016 aa)    
Predicted Functional Partners:
VP01_1844g4
Uncharacterized protein.
    
 0.970
VP01_491g4
Non-specific serine/threonine protein kinase.
    
 0.946
VP01_66g8
Uncharacterized protein.
    
 0.913
VP01_740g3
Uncharacterized protein.
    
 0.846
VP01_2483g4
Uncharacterized protein.
    
 0.846
VP01_316g12
Non-specific serine/threonine protein kinase.
    
 0.842
VP01_2927g2
CRIB domain-containing protein.
    
 0.842
VP01_7709g1
Uncharacterized protein.
    
 0.830
VP01_1998g3
Uncharacterized protein.
    
 0.830
VP01_1187g1
Ras-like C3 botulinum toxin substrate 1.
    
 0.830
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.