STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2935g2Ribosomal_L5_C domain-containing protein. (356 aa)    
Predicted Functional Partners:
rplO
Ribosomal protein L15.
  
 0.998
VP01_164g9
Ribosomal_L6 domain-containing protein.
  
 0.997
VP01_969g7
Uncharacterized protein.
   
 
 0.996
VP01_9g13
Uncharacterized protein.
   
 
 0.996
VP01_889g12
50S ribosomal protein L19e.
  
 0.996
rpmC
Ribosomal protein L29.
  
 0.996
VP01_463g17
Ribosomal_L18_c domain-containing protein.
  
 0.996
rplC
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 0.996
VP01_2962g9
Ribosomal_L30_N domain-containing protein.
  
 0.996
rplV
Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
  
 0.996
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.