STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2936g2PUA domain-containing protein. (252 aa)    
Predicted Functional Partners:
VP01_551g10
SUI1 domain-containing protein.
   
 
 0.986
VP01_2446g2
SUI1 domain-containing protein.
   
 
 0.928
VP01_3686g2
30S ribosomal protein S28e.
    
   0.778
VP01_3042g4
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.759
rpsD
Ribosomal protein S4.
   
 
 0.752
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.751
rpsC
Ribosomal protein S3.
    
   0.751
VP01_2881g5
Archaeal ribosomal protein S17P; Belongs to the universal ribosomal protein uS17 family.
   
   0.742
VP01_381g6
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
   0.740
VP01_2160g3
WD_REPEATS_REGION domain-containing protein.
   
   0.735
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.