STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2914g3Uncharacterized protein. (228 aa)    
Predicted Functional Partners:
VP01_709g4
VPS13_mid_rpt domain-containing protein; Belongs to the fatty acid desaturase type 1 family.
    
 0.601
VP01_595g9
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.601
VP01_1624g4
FA_desaturase domain-containing protein; Belongs to the fatty acid desaturase type 1 family.
    
 0.601
VP01_1037g16
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.601
VP01_218g18
L-lactate dehydrogenase (Cytochrome); Belongs to the cytochrome b5 family.
   
 0.587
GHPOD
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
    
 0.576
VP01_3035g2
Uncharacterized protein.
    
 0.560
VP01_265g20
PWWP domain-containing protein.
    
 0.560
VP01_759g3
Uncharacterized protein.
    
  0.536
VP01_2211g2
Uncharacterized protein.
    
  0.536
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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