STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2828g2Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (189 aa)    
Predicted Functional Partners:
VP01_1763g2
SAGA-associated factor 73.
    
 0.977
VP01_2657g4
Bromo domain-containing protein.
    
 0.972
VP01_685g7
Histone acetyltransferase.
    
 0.971
VP01_239g1
Uncharacterized protein.
    
 0.967
VP01_175g7
Uncharacterized protein.
    
 0.967
VP01_100g19
Uncharacterized protein.
    
 0.966
VP01_3994g1
SGF29 C-terminal domain-containing protein.
   
 0.963
VP01_481g2
Uncharacterized protein.
    
 0.960
VP01_2381g2
Uncharacterized protein.
    
 0.952
VP01_924g3
TFIID_20kDa domain-containing protein.
    
 0.944
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.