STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2785g2Sas10 domain-containing protein. (739 aa)    
Predicted Functional Partners:
VP01_1959g1
Uncharacterized protein.
   
 0.995
VP01_140g7
Uncharacterized protein.
   
 0.994
VP01_1058g4
Uncharacterized protein.
   
 0.994
VP01_836g2
WD_REPEATS_REGION domain-containing protein.
   
 0.993
VP01_2056g2
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.992
VP01_2199g3
WD_REPEATS_REGION domain-containing protein.
   
 0.990
VP01_524g4
Utp12 domain-containing protein.
   
 0.989
VP01_2681g1
PINc domain-containing protein.
   
 0.987
VP01_283g3
U3 small nucleolar RNA-associated protein 22.
   
 0.986
VP01_1609g17
S4 RNA-binding domain-containing protein.
   
  0.986
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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