STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2704g3Helicase ATP-binding domain-containing protein. (693 aa)    
Predicted Functional Partners:
VP01_2222g3
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
 
 0.886
VP01_54g6
RecA protein; Belongs to the RecA family.
   
 
 0.754
VP01_243g7
Uncharacterized protein.
    
 
 0.731
VP01_1252g3
Uncharacterized protein.
   
 
 0.689
VP01_12g5
Uncharacterized protein.
   
 0.687
VP01_4363g2
Uncharacterized protein.
  
  0.677
VP01_348g7
Uncharacterized protein.
  
  0.675
VP01_1879g5
Uncharacterized protein.
  
  0.669
VP01_1850g5
Uncharacterized protein.
  
  0.665
VP01_1287g3
Helicase ATP-binding domain-containing protein.
  
  0.662
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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