STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2670g4TPT domain-containing protein. (530 aa)    
Predicted Functional Partners:
VP01_390g12
Uncharacterized protein.
     
 0.523
VP01_1380g8
Fork-head domain-containing protein.
     
 0.523
VP01_418g5
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
 
      0.489
VP01_2428g1
Uncharacterized protein.
   
 
  0.468
VP01_1640g3
Uncharacterized protein.
    
 0.460
VP01_918g3
GTP-binding protein ypt1.
   
 
 0.454
VP01_840g2
Uncharacterized protein.
    
 
 0.430
VP01_390g4
Uncharacterized protein.
      
 0.422
VP01_995g6
Uncharacterized protein.
      
 0.420
VP01_941g9
ANK_REP_REGION domain-containing protein.
    
  0.400
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.