STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2828g4CUE domain-containing protein. (453 aa)    
Predicted Functional Partners:
VP01_1780g2
26S proteasome regulatory subunit N12.
    
  0.879
VP01_330g2
Ysc84 domain-containing protein.
    
   0.707
VP01_255g10
SH3 domain-containing protein.
    
   0.707
VP01_174g5
Ysc84 domain-containing protein.
    
   0.695
VP01_4g16
Uncharacterized protein.
    
  0.658
VP01_2244g1
Uncharacterized protein.
    
  0.658
VP01_3101g2
Autophagy-related protein.
    
 
 0.586
VP01_2125g4
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase.
   
 0.568
rpsC
Ribosomal protein S3.
    
  0.552
VP01_436g8
Importin subunit alpha; Belongs to the importin alpha family.
    
 0.550
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.