STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2809g5Carrier domain-containing protein. (689 aa)    
Predicted Functional Partners:
VP01_538g4
Propionyl-CoA carboxylase beta chain.
    
 0.847
VP01_137g6
Fatty acid synthase subunit beta.
 
 
   0.818
VP01_2190g4
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.755
VP01_7g25
Uncharacterized protein.
    
 0.708
VP01_801g2
Fatty acid synthase subunit beta.
 
 
   0.698
VP01_2320g1
Spindle pole body component.
    
 0.676
VP01_162g5
Spindle pole body component.
    
 0.676
VP01_158g9
Spindle pole body component.
    
 0.676
VP01_135g3
Uncharacterized protein.
    
 0.676
VP01_3028g4
Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.
    
 0.671
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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