STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_263g5Uncharacterized protein. (1472 aa)    
Predicted Functional Partners:
VP01_230g11
Uncharacterized protein.
    
 
 0.937
VP01_915g9
Uncharacterized protein.
    
 
 0.859
VP01_3455g4
FH2 domain-containing protein.
    
 
 0.735
VP01_3455g3
GBD/FH3 domain-containing protein.
    
 
 0.735
VP01_1618g2
Vesicle-fusing ATPase.
    
  0.719
VP01_1310g3
OBG-type G domain-containing protein.
    
   0.699
VP01_1366g1
PUM-HD domain-containing protein.
    
   0.692
VP01_2606g2
DNA_pol_E_B domain-containing protein.
    
   0.691
VP01_784g6
CAMK/CAMKL/KIN1 protein kinase.
    
   0.687
VP01_784g8
CAMK/CAMKL/KIN1 protein kinase.
    
   0.687
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.