STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2714g1Uncharacterized protein. (459 aa)    
Predicted Functional Partners:
VP01_288g11
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.937
VP01_1394g3
Uncharacterized protein.
    
 
 0.918
VP01_77g4
Uncharacterized protein.
    
 
 0.917
VP01_2234g4
Uncharacterized protein.
    
 
 0.916
VP01_801g3
DNA-directed RNA polymerase.
    
 
 0.858
VP01_1239g1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.858
VP01_2201g1
Uncharacterized protein.
    
 
 0.845
VP01_600g6
Uncharacterized protein.
    
 
 0.832
VP01_1672g6
DNA-directed RNA polymerase III subunit C5.
    
 
 0.824
VP01_200g3
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.813
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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