STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2523g3CBF domain-containing protein. (593 aa)    
Predicted Functional Partners:
VP01_151g2
Uncharacterized protein.
   
 
 0.977
VP01_2086g1
Uncharacterized protein.
   
 
 0.962
VP01_462g2
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.961
VP01_603g10
Uncharacterized protein.
   
 
 0.959
VP01_1282g3
Uncharacterized protein.
   
 
 0.958
VP01_1282g6
Uncharacterized protein.
   
 
 0.958
VP01_211g5
Nucleolar GTP-binding protein 1.
   
 
 0.957
VP01_2342g2
Brix domain-containing protein.
   
 
 0.954
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.949
VP01_2147g2
NUC173 domain-containing protein.
   
 
 0.947
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.