VP01_2410g1 protein (Puccinia sorghi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP01_2410g1

26S protease regulatory subunit 7. (492 aa)

Predicted Functional Partners:

VP01_986g9

0.999

VP01_824g2

0.999

VP01_65g12

0.999

VP01_62g12

0.999

VP01_567g10

0.999

VP01_481g4

0.999

VP01_481g5

0.999

VP01_391g6

0.999

VP01_3340g1

0.999

VP01_3063g3

0.999

Your Current Organism:

Puccinia sorghi

NCBI taxonomy Id: 27349
Other names: P. sorghi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP01_2410g1	VP01_3063g3	A0A0L6V6J6	A0A0L6UZS0	26S protease regulatory subunit 7.	20S proteasome subunit beta 2.	0.999
VP01_2410g1	VP01_3340g1	A0A0L6V6J6	A0A0L6UX69	26S protease regulatory subunit 7.	VWFA domain-containing protein.	0.999
VP01_2410g1	VP01_391g6	A0A0L6V6J6	A0A0L6USJ8	26S protease regulatory subunit 7.	Proteasome subunit alpha type.	0.999
VP01_2410g1	VP01_481g4	A0A0L6V6J6	A0A0L6UMJ8	26S protease regulatory subunit 7.	26S proteasome regulatory subunit N6.	0.999
VP01_2410g1	VP01_481g5	A0A0L6V6J6	A0A0L6UNA0	26S protease regulatory subunit 7.	26S proteasome regulatory subunit N7.	0.999
VP01_2410g1	VP01_567g10	A0A0L6V6J6	A0A0L6UIS3	26S protease regulatory subunit 7.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
VP01_2410g1	VP01_62g12	A0A0L6V6J6	A0A0L6UH27	26S protease regulatory subunit 7.	Proteasome endopeptidase complex.	0.999
VP01_2410g1	VP01_65g12	A0A0L6V6J6	A0A0L6UFA5	26S protease regulatory subunit 7.	26S proteasome regulatory subunit N9.	0.999
VP01_2410g1	VP01_824g2	A0A0L6V6J6	A0A0L6UAP1	26S protease regulatory subunit 7.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
VP01_2410g1	VP01_986g9	A0A0L6V6J6	A0A0L6U5K1	26S protease regulatory subunit 7.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
VP01_3063g3	VP01_2410g1	A0A0L6UZS0	A0A0L6V6J6	20S proteasome subunit beta 2.	26S protease regulatory subunit 7.	0.999
VP01_3063g3	VP01_3340g1	A0A0L6UZS0	A0A0L6UX69	20S proteasome subunit beta 2.	VWFA domain-containing protein.	0.997
VP01_3063g3	VP01_391g6	A0A0L6UZS0	A0A0L6USJ8	20S proteasome subunit beta 2.	Proteasome subunit alpha type.	0.999
VP01_3063g3	VP01_481g4	A0A0L6UZS0	A0A0L6UMJ8	20S proteasome subunit beta 2.	26S proteasome regulatory subunit N6.	0.999
VP01_3063g3	VP01_481g5	A0A0L6UZS0	A0A0L6UNA0	20S proteasome subunit beta 2.	26S proteasome regulatory subunit N7.	0.999
VP01_3063g3	VP01_567g10	A0A0L6UZS0	A0A0L6UIS3	20S proteasome subunit beta 2.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.995
VP01_3063g3	VP01_62g12	A0A0L6UZS0	A0A0L6UH27	20S proteasome subunit beta 2.	Proteasome endopeptidase complex.	0.999
VP01_3063g3	VP01_65g12	A0A0L6UZS0	A0A0L6UFA5	20S proteasome subunit beta 2.	26S proteasome regulatory subunit N9.	0.999
VP01_3063g3	VP01_824g2	A0A0L6UZS0	A0A0L6UAP1	20S proteasome subunit beta 2.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.995
VP01_3063g3	VP01_986g9	A0A0L6UZS0	A0A0L6U5K1	20S proteasome subunit beta 2.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.991