VP01_2407g2 protein (Puccinia sorghi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP01_2407g2

L-iditol 2-dehydrogenase. (371 aa)

Predicted Functional Partners:

VP01_3965g2

0.935

VP01_286g3

0.915

VP01_573g9

0.903

VP01_1408g1

0.873

VP01_3213g4

0.821

VP01_2280g2

0.821

VP01_1947g4

0.821

VP01_1437g3

0.821

VP01_1022g10

0.821

VP01_1612g9

0.803

Your Current Organism:

Puccinia sorghi

NCBI taxonomy Id: 27349
Other names: P. sorghi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP01_1022g10	VP01_1437g3	A0A0L6VV17	A0A0L6VKG8	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.655
VP01_1022g10	VP01_1947g4	A0A0L6VV17	A0A0L6VC96	Aminotran_1_2 domain-containing protein.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.573
VP01_1022g10	VP01_2280g2	A0A0L6VV17	A0A0L6V865	Aminotran_1_2 domain-containing protein.	Serine palmitoyltransferase.	0.834
VP01_1022g10	VP01_2407g2	A0A0L6VV17	A0A0L6V6N6	Aminotran_1_2 domain-containing protein.	L-iditol 2-dehydrogenase.	0.821
VP01_1022g10	VP01_3213g4	A0A0L6VV17	A0A0L6UYA2	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.989
VP01_1408g1	VP01_1612g9	A0A0L6VMQ1	A0A0L6VH26	Uncharacterized protein.	Uncharacterized protein.	0.458
VP01_1408g1	VP01_2407g2	A0A0L6VMQ1	A0A0L6V6N6	Uncharacterized protein.	L-iditol 2-dehydrogenase.	0.873
VP01_1408g1	VP01_286g3	A0A0L6VMQ1	A0A0L6V1W1	Uncharacterized protein.	Phosphotransferase.	0.581
VP01_1408g1	VP01_3965g2	A0A0L6VMQ1	A0A0L6USA2	Uncharacterized protein.	Uncharacterized protein.	0.526
VP01_1408g1	VP01_573g9	A0A0L6VMQ1	A0A0L6UIJ5	Uncharacterized protein.	Phosphotransferase.	0.412
VP01_1437g3	VP01_1022g10	A0A0L6VKG8	A0A0L6VV17	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.655
VP01_1437g3	VP01_1947g4	A0A0L6VKG8	A0A0L6VC96	Aminotran_1_2 domain-containing protein.	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.786
VP01_1437g3	VP01_2280g2	A0A0L6VKG8	A0A0L6V865	Aminotran_1_2 domain-containing protein.	Serine palmitoyltransferase.	0.650
VP01_1437g3	VP01_2407g2	A0A0L6VKG8	A0A0L6V6N6	Aminotran_1_2 domain-containing protein.	L-iditol 2-dehydrogenase.	0.821
VP01_1612g9	VP01_1408g1	A0A0L6VH26	A0A0L6VMQ1	Uncharacterized protein.	Uncharacterized protein.	0.458
VP01_1612g9	VP01_2407g2	A0A0L6VH26	A0A0L6V6N6	Uncharacterized protein.	L-iditol 2-dehydrogenase.	0.803
VP01_1612g9	VP01_3965g2	A0A0L6VH26	A0A0L6USA2	Uncharacterized protein.	Uncharacterized protein.	0.564
VP01_1947g4	VP01_1022g10	A0A0L6VC96	A0A0L6VV17	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.573
VP01_1947g4	VP01_1437g3	A0A0L6VC96	A0A0L6VKG8	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.786
VP01_1947g4	VP01_2280g2	A0A0L6VC96	A0A0L6V865	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Serine palmitoyltransferase.	0.564