STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2338g2UV excision repair protein Rad23. (407 aa)    
Predicted Functional Partners:
VP01_448g4
Uncharacterized protein.
   
 0.999
VP01_395g9
JmjC domain-containing protein.
    
 0.998
VP01_186g1
Thioredoxin domain-containing protein.
    
 0.998
trxA
Thioredoxin.
    
 0.998
VP01_265g17
Josephin domain-containing protein.
    
 0.993
VP01_3340g1
VWFA domain-containing protein.
   
 0.992
VP01_2977g1
Uncharacterized protein.
    
 
 0.989
VP01_109g5
Uncharacterized protein.
   
 0.980
VP01_1186g3
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.975
VP01_567g10
26S protease regulatory subunit 4; Belongs to the AAA ATPase family.
   
 0.974
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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