STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_227g13Uncharacterized protein. (289 aa)    
Predicted Functional Partners:
VP01_797g2
Uncharacterized protein.
    
 0.746
VP01_1495g2
WD_REPEATS_REGION domain-containing protein.
    
 0.740
VP01_102g9
B30.2/SPRY domain-containing protein.
    
 0.733
VP01_1640g3
Uncharacterized protein.
    
 0.666
VP01_1912g2
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.652
VP01_651g5
Histone-lysine N-methyltransferase SETD1.
    
 0.646
VP01_2729g3
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.645
VP01_2823g5
ULK/ULK protein kinase.
    
 0.637
VP01_2823g3
ULK/ULK protein kinase.
    
 0.637
VP01_1092g1
Uncharacterized protein.
    
 0.634
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.