STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2299g3AA_permease domain-containing protein. (714 aa)    
Predicted Functional Partners:
VP01_1584g4
Glutamine amidotransferase type-1 domain-containing protein.
   
 
 0.689
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.648
VP01_1373g4
AP_endonuc_2 domain-containing protein.
   
 0.644
VP01_342g3
Transket_pyr domain-containing protein.
   
 0.558
VP01_1129g2
AA_permease domain-containing protein.
  
     0.537
VP01_3129g3
Sphinganine-1-phosphate aldolase.
  
 
 0.532
VP01_2708g1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 
 0.532
VP01_2022g1
Uncharacterized protein.
  
 
 0.532
VP01_1327g4
Uncharacterized protein.
  
 
 0.532
VP01_129g14
Prephenate dehydratase domain-containing protein.
     
 0.523
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.