STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2309g2Cell division cycle protein 48. (864 aa)    
Predicted Functional Partners:
VP01_6g6
MPN domain-containing protein.
   
 0.999
VP01_2082g2
Uncharacterized protein.
   
 0.999
VP01_1449g5
Uncharacterized protein.
    
 0.996
VP01_83g16
C2H2-type domain-containing protein.
    
 0.991
VP01_6g10
PRKCSH domain-containing protein.
    
 0.989
VP01_66g10
OTU domain-containing protein.
   
 0.987
VP01_516g10
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.987
VP01_380g4
Uncharacterized protein.
   
 0.987
VP01_2113g3
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.986
VP01_214g8
Proteasome subunit beta.
   
 0.981
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.