STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2201g1Uncharacterized protein. (522 aa)    
Predicted Functional Partners:
VP01_1394g3
Uncharacterized protein.
   
 0.999
VP01_77g4
Uncharacterized protein.
   
 0.998
VP01_2234g4
Uncharacterized protein.
   
 0.998
VP01_1672g6
DNA-directed RNA polymerase III subunit C5.
   
 0.997
VP01_1390g4
Uncharacterized protein.
    
 0.997
VP01_932g1
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.996
VP01_288g11
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.996
VP01_216g7
DNA-directed RNA polymerase III subunit C19.
   
 0.996
VP01_1679g9
Uncharacterized protein.
   
 0.996
VP01_127g5
DNA-directed RNA polymerase II subunit E.
   
 0.996
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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