STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2189g6Aminotran_5 domain-containing protein. (403 aa)    
Predicted Functional Partners:
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 
 0.969
VP01_3379g2
DAO domain-containing protein.
  
 
 0.968
ilvA
Threonine dehydratase.
  
 0.965
aceB
Malate synthase; Belongs to the malate synthase family.
  
 
 0.964
aceA-2
Isocitrate lyase.
  
 
 0.963
VP01_153g7
Alanine transaminase.
  
 0.960
gcvH
Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
    
 0.957
trpB-2
Tryptophan synthase.
  
 
 0.953
VP01_497g3
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.942
lpdA
Dihydrolipoyl dehydrogenase.
     
 0.942
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.