STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2120g2Uncharacterized protein. (195 aa)    
Predicted Functional Partners:
VP01_1292g6
CRIB domain-containing protein.
   
 0.873
VP01_848g4
Uncharacterized protein.
    
 
 0.724
VP01_156g2
Calmodulin; Belongs to the calmodulin family.
    
 
 0.724
VP01_2604g2
WH2 domain-containing protein.
    
 
 0.713
VP01_950g5
Uncharacterized protein.
    
 
 0.671
VP01_48g7
Uncharacterized protein.
    
 
 0.668
VP01_14g6
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
    
 
 0.666
VP01_1893g2
Uncharacterized protein.
   
 
 0.650
VP01_385g2
BAR domain-containing protein.
    
 0.649
VP01_400g14
Uncharacterized protein.
    
 0.649
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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