STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_2066g3Uncharacterized protein. (225 aa)    
Predicted Functional Partners:
VP01_762g6
Nuclear cap-binding protein subunit 2.
    
 
 0.628
VP01_429g2
Sister chromatid cohesion protein.
   
    0.592
VP01_200g3
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 
  0.564
VP01_1064g4
Uncharacterized protein.
   
  0.548
VP01_2691g3
Uncharacterized protein.
    
 0.527
VP01_2382g1
Smg4_UPF3 domain-containing protein.
    
  0.503
VP01_599g7
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 
 0.480
VP01_817g1
BRCT domain-containing protein.
    
 
 0.442
VP01_646g5
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.442
VP01_2695g2
Uncharacterized protein.
    
 
 0.439
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.