STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_218g18L-lactate dehydrogenase (Cytochrome); Belongs to the cytochrome b5 family. (496 aa)    
Predicted Functional Partners:
VP01_1844g2
FAD-binding PCMH-type domain-containing protein.
  
 0.983
VP01_174g2
FAD-binding PCMH-type domain-containing protein.
  
 0.961
VP01_300g5
Malic enzyme.
    
 0.957
VP01_32g19
FAD-binding PCMH-type domain-containing protein.
 
 0.953
VP01_540g10
Uncharacterized protein.
  
 0.950
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.949
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.945
ilvB
Acetolactate synthase.
  
 
 0.938
VP01_540g4
Uncharacterized protein.
  
 0.933
pdhA
Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
 0.930
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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