STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_195g9Uncharacterized protein. (473 aa)    
Predicted Functional Partners:
VP01_680g9
Uncharacterized protein.
  
 
 
 0.964
VP01_760g7
CTLH domain-containing protein.
    
 
 0.954
VP01_1268g5
Uncharacterized protein.
   
 
 0.954
VP01_1792g3
B30.2/SPRY domain-containing protein.
   
 
 0.880
VP01_160g12
LisH domain-containing protein.
   
 
 0.880
VP01_5390g1
Protein yippee-like; Belongs to the yippee family.
  
 
 
 0.864
VP01_1g6
Uncharacterized protein.
    
 
 0.806
VP01_2672g4
PRA1 family protein.
    
 
 0.669
VP01_1162g13
Ubiquitin-conjugating enzyme E2 8; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.479
VP01_2257g4
Uncharacterized protein.
    
 
 0.406
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.