STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_189g5Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
VP01_2041g2
SH3 domain-containing protein.
   
 0.977
VP01_2139g3
Uncharacterized protein.
   
 
  0.976
VP01_141g2
Uncharacterized protein.
   
 
  0.976
VP01_269g8
Uncharacterized protein.
    
 0.969
VP01_2670g6
WD_REPEATS_REGION domain-containing protein.
    
 0.954
VP01_804g2
Uncharacterized protein.
    
 0.943
VP01_1859g1
TPR_REGION domain-containing protein.
    
 0.943
VP01_561g2
Uncharacterized protein.
    
 0.938
VP01_1891g2
Pex2_Pex12 domain-containing protein.
    
 0.936
VP01_210g11
Uncharacterized protein.
    
 0.933
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.