STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_17g18RNB domain-containing protein; Belongs to the RNR ribonuclease family. (1359 aa)    
Predicted Functional Partners:
VP01_1432g2
EXOSC1 domain-containing protein.
   
 0.956
VP01_663g8
Exosome complex component RRP45.
   
 0.955
VP01_1838g1
RNase_PH domain-containing protein.
   
 0.953
VP01_1595g3
Uncharacterized protein.
   
 0.952
VP01_768g8
RNase_PH domain-containing protein.
   
 0.950
VP01_48g5
RNase_PH domain-containing protein.
   
 0.950
VP01_2563g2
Uncharacterized protein.
   
 0.950
VP01_2532g1
Uncharacterized protein.
   
 0.950
VP01_1351g2
Uncharacterized protein.
   
 0.950
VP01_1823g3
RNase_PH domain-containing protein.
   
 0.947
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.