STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_1789g10Arrestin_C domain-containing protein. (746 aa)    
Predicted Functional Partners:
VP01_2175g2
E3 ubiquitin-protein ligase.
    
 
 0.839
VP01_2701g4
Uncharacterized protein.
    
 0.729
VP01_2416g9
Thioredoxin.
    
 0.729
VP01_186g1
Thioredoxin domain-containing protein.
    
 0.729
trxA
Thioredoxin.
    
 0.729
VP01_1387g3
Non-specific serine/threonine protein kinase.
    
 
 0.681
VP01_11713g1
HECT domain-containing protein.
    
 
 0.659
VP01_7517g1
UBA domain-containing protein.
    
 
 0.635
VP01_6114g2
Uncharacterized protein.
    
 
 0.635
VP01_1928g6
Uncharacterized protein.
    
 
 0.635
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.