STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_1514g1Chitin synthase; Plays a major role in cell wall biogenesis. (979 aa)    
Predicted Functional Partners:
VP01_1008g9
UDP-N-acetylglucosamine pyrophosphorylase.
   
 0.935
VP01_111g17
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
 
      0.872
ilvB
Acetolactate synthase.
   
 
 0.752
VP01_420g5
Dihydroxy-acid dehydratase.
   
 0.750
VP01_915g14
UDP-glucose 6-dehydrogenase.
  
 
 0.726
VP01_1795g2
Chitin synthase.
    
0.644
VP01_797g2
Uncharacterized protein.
    
 0.637
ilvN
Acetolactate synthase, small subunit.
    
 0.614
VP01_9484g1
Uncharacterized protein.
    
 0.605
VP01_7748g1
RNA-directed DNA polymerase, Non LTR Retrotransposon.
    
 0.605
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.