STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_135g3Uncharacterized protein. (646 aa)    
Predicted Functional Partners:
VP01_7g25
Uncharacterized protein.
   
 0.970
VP01_2660g1
Uncharacterized protein.
    
 0.963
VP01_158g9
Spindle pole body component.
   
 0.963
VP01_2190g4
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.948
VP01_1652g5
Uncharacterized protein.
    
 0.885
VP01_1389g4
Uncharacterized protein.
    
 0.879
VP01_369g4
Uncharacterized protein.
    
 0.871
VP01_757g7
Uncharacterized protein.
    
 0.855
VP01_123g5
Acyl-CoA dehydrogenase.
    
 
 0.767
VP01_667g2
Uncharacterized protein.
    
 
 0.753
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (12%) [HD]