STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_133g3Uncharacterized protein. (930 aa)    
Predicted Functional Partners:
VP01_815g8
SMC hinge domain-containing protein.
   
 0.999
VP01_374g10
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.999
VP01_30g9
Cnd3 domain-containing protein.
   
 0.999
VP01_234g2
Structural maintenance of chromosomes protein.
   
 0.999
VP01_815g5
SMC_N domain-containing protein.
   
 0.995
VP01_411g1
SMC_N domain-containing protein.
   
 0.946
VP01_518g4
Structural maintenance of chromosomes protein.
   
 0.943
VP01_3218g3
SMC_N domain-containing protein.
   
 0.935
VP01_3218g4
SMC hinge domain-containing protein.
   
 0.935
VP01_445g4
SMC_N domain-containing protein.
   
 0.922
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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