STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_1327g4Uncharacterized protein. (97 aa)    
Predicted Functional Partners:
VP01_1902g1
Histidine biosynthesis trifunctional protein.
    
 0.945
VP01_2061g5
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.887
VP01_3427g4
Uncharacterized protein.
  
 
 0.854
trpB
Tryptophan synthase.
    
 0.837
trpB-2
Tryptophan synthase.
    
 0.837
VP01_2022g1
Uncharacterized protein.
     
 0.795
VP01_750g2
NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.793
VP01_2909g1
V-SNARE coiled-coil homology domain-containing protein.
    
 0.789
VP01_694g12
Aspartate aminotransferase.
     
 0.785
VP01_2308g1
DAGKc domain-containing protein.
   
 0.785
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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