STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_129g9C2H2-type domain-containing protein. (455 aa)    
Predicted Functional Partners:
VP01_3100g2
Histone-binding protein RBBP4.
   
 0.871
VP01_201g5
Uncharacterized protein.
    
 
 0.746
Cdc2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
   
 0.708
VP01_292g7
CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.
   
 0.708
rpsR
Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.700
VP01_189g4
Protein kinase domain-containing protein.
   
 0.699
VP01_2902g1
HMA domain-containing protein.
    
   0.698
rplC
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.671
VP01_1934g1
Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
   
 
 0.671
VP01_151g2
Uncharacterized protein.
   
   0.669
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.