STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_126g9CASP_C domain-containing protein. (700 aa)    
Predicted Functional Partners:
VP01_44g6
GRIP domain-containing protein.
    
 
 0.838
VP01_1837g2
Guanylate kinase.
    
 
 0.717
VP01_628g6
Uncharacterized protein.
    
   0.699
VP01_579g3
Golgi SNAP receptor complex member 1.
    
 0.578
VP01_208g3
Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
    
   0.542
VP01_1303g4
Uncharacterized protein.
   
  
 0.533
dph5
Diphthine synthase.
      
 0.519
VP01_283g3
U3 small nucleolar RNA-associated protein 22.
      
 0.519
VP01_1440g3
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
      
 0.519
VP01_634g4
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
      
 0.470
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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