VP01_1207g7 protein (Puccinia sorghi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP01_1207g7

Uncharacterized protein. (481 aa)

Predicted Functional Partners:

VP01_2136g2

0.590

VP01_554g5

0.584

VP01_569g11

0.566

VP01_6687g1

0.506

VP01_3970g1

0.506

VP01_3970g6

0.506

VP01_3970g5

0.506

VP01_183g6

0.485

VP01_9465g1

0.472

VP01_4806g1

0.472

Your Current Organism:

Puccinia sorghi

NCBI taxonomy Id: 27349
Other names: P. sorghi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP01_1207g7	VP01_183g6	A0A0L6VQG3	A0A0L6VFM3	Uncharacterized protein.	Uncharacterized protein.	0.485
VP01_1207g7	VP01_2136g2	A0A0L6VQG3	A0A0L6V9Q7	Uncharacterized protein.	BRO1 domain-containing protein.	0.590
VP01_1207g7	VP01_3970g1	A0A0L6VQG3	A0A0L6US90	Uncharacterized protein.	Uncharacterized protein.	0.506
VP01_1207g7	VP01_3970g5	A0A0L6VQG3	A0A0L6UU84	Uncharacterized protein.	Uncharacterized protein.	0.506
VP01_1207g7	VP01_3970g6	A0A0L6VQG3	A0A0L6US94	Uncharacterized protein.	Uncharacterized protein.	0.506
VP01_1207g7	VP01_4806g1	A0A0L6VQG3	A0A0L6UMM0	Uncharacterized protein.	Uncharacterized protein.	0.472
VP01_1207g7	VP01_554g5	A0A0L6VQG3	A0A0L6UL94	Uncharacterized protein.	Uncharacterized protein.	0.584
VP01_1207g7	VP01_569g11	A0A0L6VQG3	A0A0L6UIS7	Uncharacterized protein.	Uncharacterized protein.	0.566
VP01_1207g7	VP01_6687g1	A0A0L6VQG3	A0A0L6UEV2	Uncharacterized protein.	Uncharacterized protein.	0.506
VP01_1207g7	VP01_9465g1	A0A0L6VQG3	A0A0L6U6J0	Uncharacterized protein.	Uncharacterized protein.	0.472
VP01_183g6	VP01_1207g7	A0A0L6VFM3	A0A0L6VQG3	Uncharacterized protein.	Uncharacterized protein.	0.485
VP01_183g6	VP01_2136g2	A0A0L6VFM3	A0A0L6V9Q7	Uncharacterized protein.	BRO1 domain-containing protein.	0.497
VP01_183g6	VP01_554g5	A0A0L6VFM3	A0A0L6UL94	Uncharacterized protein.	Uncharacterized protein.	0.483
VP01_183g6	VP01_569g11	A0A0L6VFM3	A0A0L6UIS7	Uncharacterized protein.	Uncharacterized protein.	0.406
VP01_2136g2	VP01_1207g7	A0A0L6V9Q7	A0A0L6VQG3	BRO1 domain-containing protein.	Uncharacterized protein.	0.590
VP01_2136g2	VP01_183g6	A0A0L6V9Q7	A0A0L6VFM3	BRO1 domain-containing protein.	Uncharacterized protein.	0.497
VP01_2136g2	VP01_554g5	A0A0L6V9Q7	A0A0L6UL94	BRO1 domain-containing protein.	Uncharacterized protein.	0.823
VP01_2136g2	VP01_569g11	A0A0L6V9Q7	A0A0L6UIS7	BRO1 domain-containing protein.	Uncharacterized protein.	0.618
VP01_3970g1	VP01_1207g7	A0A0L6US90	A0A0L6VQG3	Uncharacterized protein.	Uncharacterized protein.	0.506
VP01_3970g5	VP01_1207g7	A0A0L6UU84	A0A0L6VQG3	Uncharacterized protein.	Uncharacterized protein.	0.506

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

28

average node degree:

5.09

avg. local clustering coefficient:

0.9

expected number of edges:

47

PPI enrichment p-value:

0.999

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030638

Polyketide metabolic process

3 of 4

2.47

1.74

0.00060

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0031177

Phosphopantetheine binding

2 of 2

2.6

1.02

0.0141

GO:0000036

Acyl carrier activity

2 of 3

2.42

1.01

0.0141

GO:0016881

Acid-amino acid ligase activity

3 of 17

1.84

1.0

0.0109

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7198

Mixed, incl. Polyketide metabolic process, and Cupin domain

5 of 16

2.09

2.95

7.07e-07

CL:7084

ABC-type transporter activity, and Bacterial extracellular solute-binding protein

6 of 74

1.5

1.88

6.83e-06

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0596

Phosphopantetheine

2 of 3

2.42

1.02

0.0133

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF12680

SnoaL-like domain

3 of 4

2.47

1.92

0.00027

PF00550

Phosphopantetheine attachment site

2 of 3

2.42

0.94

0.0189

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR009959

Polyketide cyclase SnoaL-like

3 of 3

2.6

1.84

0.00040

IPR032710

NTF2-like domain superfamily

3 of 13

1.96

1.17

0.0055

IPR036736

ACP-like superfamily

2 of 3

2.42

0.82

0.0321

IPR009081

Phosphopantetheine binding ACP domain

2 of 3

2.42

0.82

0.0321

IPR006162

Phosphopantetheine attachment site

2 of 3

2.42

0.82

0.0321

(more ...)

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (26%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About