STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_117g2Uncharacterized protein. (223 aa)    
Predicted Functional Partners:
VP01_848g4
Uncharacterized protein.
    
 
 0.653
VP01_156g2
Calmodulin; Belongs to the calmodulin family.
    
 
 0.653
VP01_873g5
Zn(2)-C6 fungal-type domain-containing protein.
    
  0.588
VP01_70g3
Zn(2)-C6 fungal-type domain-containing protein.
    
  0.588
VP01_5276g1
Uncharacterized protein.
    
  0.588
VP01_3566g1
RING-type domain-containing protein.
    
  0.588
VP01_3539g1
Zn(2)-C6 fungal-type domain-containing protein.
    
  0.588
VP01_3466g2
Fungal_trans domain-containing protein.
    
  0.588
VP01_1390g3
Uncharacterized protein.
    
  0.588
VP01_1302g2
Fungal_trans domain-containing protein.
    
  0.588
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.