STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_115g3G-patch domain-containing protein. (813 aa)    
Predicted Functional Partners:
VP01_188g6
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp43.
   
 0.999
VP01_2918g3
Uncharacterized protein.
   
 0.998
VP01_1066g4
Uncharacterized protein.
   
 0.994
VP01_40g6
Tudor domain-containing protein.
   
 
  0.980
VP01_2030g5
Uncharacterized protein.
   
 
 0.978
VP01_220g3
SF3b1 domain-containing protein.
   
 0.962
VP01_863g4
Matrin-type domain-containing protein.
    
 0.945
VP01_96g6
Uncharacterized protein.
   
 0.944
VP01_17g17
Matrin-type domain-containing protein.
   
 0.940
VP01_127g4
PSP domain-containing protein.
   
 0.909
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.