STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_1108g5Uncharacterized protein. (701 aa)    
Predicted Functional Partners:
VP01_34g8
TOG domain-containing protein.
   
 
 0.974
VP01_1472g6
Translation initiation factor eIF-2 alpha subunit.
   
 0.827
VP01_945g2
60S ribosomal protein L25.
   
 
 0.818
VP01_9g13
Uncharacterized protein.
   
 
 0.815
VP01_2977g1
Uncharacterized protein.
   
 
0.813
rpmC
Ribosomal protein L29.
   
 
 0.812
rplX
Ribosomal protein L24.
   
 
 0.809
rpsC
Ribosomal protein S3.
   
   0.806
rpsP
Ribosomal protein S16.
  
   0.806
VP01_463g17
Ribosomal_L18_c domain-containing protein.
   
   0.804
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.