STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_100g18Uncharacterized protein. (207 aa)    
Predicted Functional Partners:
VP01_297g2
Flavin_Reduct domain-containing protein.
    
 0.715
VP01_1881g1
Uncharacterized protein.
    
 0.715
VP01_1724g1
Heat shock protein 83.
    
 0.715
VP01_2064g1
Uncharacterized protein.
    
 0.706
VP01_2401g3
Serine/threonine-protein phosphatase.
    
 
 0.576
VP01_2330g2
Stress-induced-phosphoprotein 1.
   
 
 0.563
VP01_638g3
DH domain-containing protein.
    
  0.408
VP01_407g1
TKL protein kinase.
    
  0.408
VP01_28g8
TKL/LISK/LISK-DD1 protein kinase.
    
  0.408
VP01_1643g1
Uncharacterized protein.
    
  0.408
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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