Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG11127.1 | CDG11128.1 | SMDB11_0544 | SMDB11_0545 | TonB-dependent receptor. | Putative iron transport protein. | 0.793 |
CDG11127.1 | CDG11129.1 | SMDB11_0544 | SMDB11_0546 | TonB-dependent receptor. | Hypothetical protein. | 0.790 |
CDG11127.1 | CDG11130.1 | SMDB11_0544 | SMDB11_0547 | TonB-dependent receptor. | Putative iron transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.785 |
CDG11127.1 | CDG11131.1 | SMDB11_0544 | SMDB11_0548 | TonB-dependent receptor. | Putative iron ABC transporter, ATP-binding protein. | 0.801 |
CDG11127.1 | acrZ | SMDB11_0544 | SMDB11_0549 | TonB-dependent receptor. | Hypothetical protein; AcrA-AcrB-AcrZ-TolC is a drug efflux protein complex with a broad substrate specificity. This protein binds to AcrB and is required for efflux of some but not all substrates, suggesting it may influence the specificity of drug export. | 0.478 |
CDG11127.1 | modE | SMDB11_0544 | SMDB11_0542A | TonB-dependent receptor. | DNA-binding transcriptional dual regulator. | 0.506 |
CDG11128.1 | CDG11127.1 | SMDB11_0545 | SMDB11_0544 | Putative iron transport protein. | TonB-dependent receptor. | 0.793 |
CDG11128.1 | CDG11129.1 | SMDB11_0545 | SMDB11_0546 | Putative iron transport protein. | Hypothetical protein. | 0.779 |
CDG11128.1 | CDG11130.1 | SMDB11_0545 | SMDB11_0547 | Putative iron transport protein. | Putative iron transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.941 |
CDG11128.1 | CDG11131.1 | SMDB11_0545 | SMDB11_0548 | Putative iron transport protein. | Putative iron ABC transporter, ATP-binding protein. | 0.943 |
CDG11128.1 | acrZ | SMDB11_0545 | SMDB11_0549 | Putative iron transport protein. | Hypothetical protein; AcrA-AcrB-AcrZ-TolC is a drug efflux protein complex with a broad substrate specificity. This protein binds to AcrB and is required for efflux of some but not all substrates, suggesting it may influence the specificity of drug export. | 0.478 |
CDG11128.1 | modE | SMDB11_0545 | SMDB11_0542A | Putative iron transport protein. | DNA-binding transcriptional dual regulator. | 0.587 |
CDG11129.1 | CDG11127.1 | SMDB11_0546 | SMDB11_0544 | Hypothetical protein. | TonB-dependent receptor. | 0.790 |
CDG11129.1 | CDG11128.1 | SMDB11_0546 | SMDB11_0545 | Hypothetical protein. | Putative iron transport protein. | 0.779 |
CDG11129.1 | CDG11130.1 | SMDB11_0546 | SMDB11_0547 | Hypothetical protein. | Putative iron transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.781 |
CDG11129.1 | CDG11131.1 | SMDB11_0546 | SMDB11_0548 | Hypothetical protein. | Putative iron ABC transporter, ATP-binding protein. | 0.777 |
CDG11129.1 | acrZ | SMDB11_0546 | SMDB11_0549 | Hypothetical protein. | Hypothetical protein; AcrA-AcrB-AcrZ-TolC is a drug efflux protein complex with a broad substrate specificity. This protein binds to AcrB and is required for efflux of some but not all substrates, suggesting it may influence the specificity of drug export. | 0.478 |
CDG11129.1 | modE | SMDB11_0546 | SMDB11_0542A | Hypothetical protein. | DNA-binding transcriptional dual regulator. | 0.538 |
CDG11130.1 | CDG11127.1 | SMDB11_0547 | SMDB11_0544 | Putative iron transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | TonB-dependent receptor. | 0.785 |
CDG11130.1 | CDG11128.1 | SMDB11_0547 | SMDB11_0545 | Putative iron transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | Putative iron transport protein. | 0.941 |
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