STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacCD-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 6a; Belongs to the peptidase S11 family. (401 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase.
     
 0.978
mrcA
Fused penicillin-binding protein 1a: mureintransglycosylase/murein transpeptidase.
     
 0.909
CDG10984.1
Putative penicillin-binding protein.
     
 0.905
CDG12464.1
D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 6b; Belongs to the peptidase S11 family.
  
  
 
0.904
dacA
D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 5; Belongs to the peptidase S11 family.
  
  
0.903
ftsI
Transpeptidase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
 
 
 0.751
mrdB
Cell wall shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.712
ampH
Penicillin-binding protein.
      
 0.663
ftsK
DNA-binding membrane protein required forchromosome resolution and partitioning.
 
   
 0.616
rlmH
Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
  
 0.563
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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